Say good morning to cozy autumn days with Pumpkin Morning Glory Muffins—moist, hearty, and brimming with nourishing ingredients. These healthy pumpkin muffins are the ultimate fall breakfast recipe, packed with grated carrots, apple, dried cranberries, coconut, and pecans. A blend of whole wheat flour and pumpkin spice gives them a warm, comforting flavor while still keeping them light enough for everyday mornings.

If you’re after a breakfast that feels indulgent but fuels your day, these whole wheat muffins are it. Whether you’re sipping coffee on a crisp morning or packing snacks for the week, this batch of muffins will keep everyone satisfied.

Why You’ll Love These Pumpkin Morning Glory Muffins

Loaded with wholesome ingredients
Naturally sweetened and full of fall flavors
Great for meal prep or busy mornings
A healthy pumpkin muffin the whole family will enjoy

Ingredients

190 g (1½ cups) whole wheat flour
60 g (½ cup) all-purpose flour
165 g (¾ cup) packed light brown sugar
1 tbsp baking powder
2 tsp baking soda
2 tsp pumpkin spice
½ tsp cinnamon
½ tsp salt
180 g (¾ cup) pumpkin purée (not pumpkin pie filling)
60 ml (¼ cup) unsweetened applesauce
120 ml (½ cup) melted coconut oil
1 large apple, shredded
1 tbsp vanilla extract
2 cups (200 g) grated carrots (about 3 medium)
½ cup (60 g) dried cranberries
½ cup (40 g) flaked coconut
½ cup (55 g) chopped pecans

How to Make These Healthy Pumpkin Muffins

Prep Your Pan: Preheat oven to 400°F (200°C). Line a 12-cup muffin tin with paper liners.
Mix Dry Ingredients: In a medium bowl, whisk together both flours, brown sugar, baking powder, baking soda, pumpkin spice, cinnamon, and salt.
Mix Wet Ingredients: In a large bowl, whisk together pumpkin purée, applesauce, melted coconut oil, grated apple, vanilla extract, and grated carrots.
Combine & Fold: Add the dry ingredients into the wet and stir just until combined. Fold in dried cranberries, coconut, and chopped pecans.
Fill & Bake: Divide the batter evenly into the muffin cups. Bake for 24–28 minutes, or until a toothpick comes out clean or with a few moist crumbs.
Cool & Enjoy: Let muffins cool in the tin for 5 minutes before transferring to a wire rack to cool completely.

Tips for the Best Whole Wheat Muffins

Use freshly grated carrots and apple for extra moisture.
Don’t overmix the batter—stir until just combined.
Store in an airtight container for up to 3 days, or freeze for later.
Warm them up in the microwave for 10–15 seconds for that fresh-baked taste.

Olivia’s Morning Glory Moment

These muffins were born out of my love for all things autumn and my need for something nourishing during the busy school morning rush. I wanted a muffin that felt like a treat but had enough goodness to carry me (and my kiddos) through the morning. One bite, and I was hooked—soft, warmly spiced, and full of texture. They’ve become a weekend baking ritual in our house!

What to Serve with Pumpkin Morning Glory Muffins

Pair these with a dollop of Greek yogurt and fresh fruit for a balanced breakfast. They’re also great with a mug of hot tea or pumpkin spice coffee. For on-the-go mornings, just grab one and go—they’re portable and satisfying.

How to Store and Freeze Muffins

Let muffins cool completely before storing. Keep in an airtight container at room temperature for up to 3 days. To freeze, wrap each muffin in plastic and place in a freezer-safe bag. Thaw overnight or warm in the microwave for a quick breakfast.

FAQs About Pumpkin Morning Glory Muffins

Can I make these gluten-free?

Try using a 1:1 gluten-free flour blend for both flours.

Can I skip the nuts or coconut?

Absolutely—just leave them out or replace with seeds.

Can I use maple syrup instead of brown sugar?

These muffins work best with a dry sweetener, but coconut sugar is a great sub.

Can I use butter instead of coconut oil?

Yes, just melt it first and let it cool slightly before mixing.

Fall’s Best Muffin—Wholesome, Cosy, and Delicious

Pumpkin Morning Glory Muffins are the kind of treat that makes your whole kitchen smell like fall. They’re packed with goodness, easy to make, and perfect for anyone looking to start their day with something that’s both healthy and satisfying.

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